1), M. leprae TN (AL450380.1), M. marinum M (CP000854.1), M. parascrofulaceum BAA-614 (ADNV00000000), M. smegmatis MC2 155 (CP000480.1), Mycobacterium sp. JLS (CP000580.1), Mycobacterium sp. KMS (CP000518.1), Mycobacterium sp. MCS (CP000384.1), M. tuberculosis CDC1551 (AE000516.2), M. tuberculosis H37Ra (CP000611.1), M. tuberculosis H37Rv (AL123456.2), M. tuberculosis KZN 1435 (CP001658.1), M. ulcerans Agy99 (CP000325.1) and M. vanbaalenii PYR-1 (CP000511.1). (PDF 1 MB) Additional file 3: DNA sequence alignment GSK872 ic50 of conserved proteins in mycobacterial genomes. Sequences are from genomes of M. Selleck Osimertinib abscessus ATCC 19977 (CU458896.1), M. avium 104 (CP000479.1), M. avium subsp. paratuberculosis K10 (AE016958.1), M.

bovis subsp. bovis AF2122/97 (BX248333.1), M. bovis BCG Pasteur 1173P2 (AM408590.1), M. bovis BCG Tokyo 172 (AP010918.1), M. gilvum PYR-GCK (CP000656.1), M. intracellulare ATCC 13950 (ABIN00000000), M. kansasii ATCC 12478 (ACBV00000000), M. leprae Br4923 (FM211192.1), M. leprae TN (AL450380.1), M. marinum Mdivi1 M (CP000854.1), M. parascrofulaceum BAA-614 (ADNV00000000),

M. smegmatis MC2 155 (CP000480.1), Mycobacterium sp. JLS (CP000580.1), Mycobacterium sp. KMS (CP000518.1), Mycobacterium sp. MCS (CP000384.1), M. tuberculosis CDC1551 (AE000516.2), M. tuberculosis H37Ra (CP000611.1), M. tuberculosis H37Rv (AL123456.2), M. tuberculosis KZN 1435 (CP001658.1), M. ulcerans Agy99 (CP000325.1) and M. vanbaalenii PYR-1 (CP000511.1). (PDF 3 MB) References 1. Kazda J: The chronology of mycobacteria and the development of mycobacterial ecology. In The ecology of mycobacteria: Impact on animal’s and human’s health. Volume 1. Edited by: Kazda J, Pavlik I, Falkinham JO, Hruska K. Dordrecht Heidelberg London New York: Springer; 2009:1–11.CrossRef 2. Radomski N, Cambau E, Moulin L, Haenn S, Moilleron R, Lucas FS: Comparison of culture methods for isolation of nontuberculous

mycobacteria from surface waters. Appl Environ Thalidomide Microbiol 2010,76(11):3514–3520.PubMedCentralPubMedCrossRef 3. Adékambi T, Drancourt M: Dissection of phylogenetic relationships among 19 rapidly growing Mycobacterium species by 16S rRNA, hsp65, sodA, recA and rpoB gene sequencing. Int J Syst Evol Microbiol 2004,54(6):2095–2105.PubMedCrossRef 4. Gomila M, Ramirez A, Lalucat J: Diversity of environmental Mycobacterium isolates from hemodialysis water as shown by a multigene sequencing approach. Appl Environ Microbiol 2007,73(12):3787–3797.PubMedCentralPubMedCrossRef 5. Mendum TA, Chilima BZ, Hirsch PR: The PCR amplification of non-tuberculous mycobacterial 16S rRNA sequences from soil. FEMS Microbiol Lett 2000,185(2):189–192.PubMedCrossRef 6. Garcia-Quintanilla A, Gonzalez-Martin J, Tudo G, Espasa M, Jiménez de Anta MT: Simultaneous identification of Mycobacterium genus and Mycobacterium tuberculosis complex in clinical samples by 5′-exonuclease fluorogenic PCR. J Clin Microbiol 2002,40(12):4646–4651.PubMedCentralPubMedCrossRef 7.