1 pmol min-1 mg-1 protein. The autoradiographs represent a typical result from three independently performed experiments, whereas the values represent the averaged results of these three independent measurements. However production of phosphorylated KdpE should SAR302503 nmr be possible in combination with the likewise decreased kinase-phosphotransferase activities. In buy Natural Product Library summary, replacing the KdpD-Usp domain influences the enzymatic activities of KdpD, explaining altered kdpFABC expression patterns in some KdpD chimeras. Importantly, KdpD-UspF and KdpD-UspG are rare examples of KdpD derivatives

that lost sensing capabilities in vivo, but exhibited kinase, phosphotransferase, and phosphatase activity in vitro. UspF and UspG differ in surface charge from the E. coli KdpD-Usp domain To examine differences between UspF, UspG, UspC and E. coli KdpD-Usp, the putative tertiary structures of these proteins/protein domain were

generated using ESyPred3D modeling [29]. Although the amino acid sequences of these proteins lack a high degree of sequence identity, all proteins share the same predicted tertiary structure, Veliparib price which consists of a bundle of four to five β-sheets surrounded by four α-helices (Fig. 7). As indicated in Fig. 7, the E. coli KdpD-Usp domain is highly charged. The flexible regions between a-helix1 and a-helix2, as well as between β-sheet4 and a-helix4 contain an accumulation of positively charged amino acids (especially Arg), which are not found in UspF or UspG (Fig. 7). In addition, the KdpD-Usp domain contains a cluster of positively charged Arg residues on the surface of a-helix1 (Fig. 7), which are neither present in UspF nor in Clomifene UspG. In contrast, UspF and UspG are characterized by a predominantly negatively charged surface (Fig. 7). Based on these results, differences in the net surface charges between KdpD-Usp and UspF/UspG may be the reason for

the non-functionality of KdpD-UspF and KdpD-UspG in vivo. In support of this hypothesis, replacing UspC with the KdpD-Usp domain resulted in a fully functional KdpD. UspC contains a positively charged amino acid cluster between a-helix1 and a-helix2 as well as between β-sheet4 and a-helix5 (Fig. 7). Figure 7 Surface charge of the Usp domain within KdpD (amino acids 253–373) compared to UspC, UspF, and UspG. The tertiary structures were obtained by ESyPred3D modeling [29]. All four proteins/protein domains consist of a bundle of four to five β-sheets (blue) surrounded by four α-helices (red). Only charged amino acids are shown. The positively charged side chains are drawn in blue, the negatively charged side chains are drawn in red. Discussion The N-terminal input domain of the KdpD sensor kinase contains a domain that belongs to the universal stress protein family [18, 19]. This domain has been characterized as an interaction site for the soluble UspC protein. Moreover, binding of UspC scaffolds the KdpD/KdpE signaling cascade under salt stress [19].